PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00022.290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 334aa    MW: 38707.4 Da    PI: 7.867
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00022.290genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58e-19103153155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr+++ +gr++AeIrdps    r +r++lg+f+taeeAa  +++a+ +++g
  Jcr4S00022.290 103 KKYRGVRQRP-WGRFAAEIRDPS----RrTRIWLGTFDTAEEAAMVYDKAAIQIKG 153
                     59********.**********84....34**********************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-30103160No hitNo description
PfamPF008473.0E-12104153IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-20104160IPR016177DNA-binding domain
SMARTSM003801.6E-36104167IPR001471AP2/ERF domain
PROSITE profilePS5103222.524104161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-30104161IPR001471AP2/ERF domain
PRINTSPR003671.6E-10105116IPR001471AP2/ERF domain
PRINTSPR003671.6E-10127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MNPSSVKYSE HKTVTNKLVK FNDSNATRIV RICVTDGDAT DSSSDENEES RTHQRVKKHI  60
NEIRIEDCVK YRATEKGEVK LGFNKQQQQR KNTRDQRYYP EGKKYRGVRQ RPWGRFAAEI  120
RDPSRRTRIW LGTFDTAEEA AMVYDKAAIQ IKGTNALTNF IKPPVRSPPP DVDITNGYDS  180
CKEETHSLSS PTSVLRFQYN EEGANDENWE SDQVKQVKDW RQPEELREDL AGEDCLANLG  240
LDFDEFLEFE HHAPIFFDEC SIPDTLLRRD DVADISFHFR PRFRCKEIEK WRGFVIYHKI  300
FLASNGAGTQ KGVPAYAKWL KKVIHVQRLA TLGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22101160262ATERF1
3gcc_A2e-22101160262ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083262.10.0PREDICTED: ethylene-responsive transcription factor CRF6
TrEMBLA0A067K8B30.0A0A067K8B3_JATCU; Uncharacterized protein
STRINGPOPTR_0002s16900.15e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.11e-49cytokinin response factor 6